PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016445044.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 217aa    MW: 23425 Da    PI: 8.4735
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016445044.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-056082123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C++ F ++  L  H++ H
  XP_016445044.1 60 YECQYCSREFANSQALGGHQNAH 82
                    99******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.5E-65787No hitNo description
Gene3DG3DSA:3.30.160.601.1E-45886IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.0E-56084IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.1756087IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAELEFQSKN GTYNPTSNGR LKLFGFNMTE EDQEQEVNST KTSSGSPESG SVPASDGRKY  60
ECQYCSREFA NSQALGGHQN AHKKERQQLK RAQMQASRNA YMRNPIVSAF APPSHLLSPT  120
GTMVVPASSP SWVYVPRAAP PFHGCVFTTS NSVRGVGNFQ YTGGVAESSL ASVGPQHVKA  180
HSGRVDVNNG PSLSKLSRVD IGPNFDDPFG LDLQLSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783843.11e-162PREDICTED: zinc finger protein 6-like
RefseqXP_016445044.11e-162PREDICTED: zinc finger protein 6-like
TrEMBLK4BX921e-120K4BX92_SOLLC; Uncharacterized protein
STRINGSolyc05g009180.1.11e-120(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29941419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.11e-13C2H2 family protein